Gene Cluster Statistics with Gene Families

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Gene Cluster Statistics with Gene Families

Identifying genomic regions that descended from a common ancestor is important for understanding the function and evolution of genomes. In distantly related genomes, clusters of homologous gene pairs are evidence of candidate homologous regions. Demonstrating the statistical significance of such "gene clusters" is an essential component of comparative genomic analyses. However, currently there ...

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RESEARCH ARTICLES Gene Cluster Statistics with Gene Families

Identifying genomic regions that descended from a common ancestor is important for understanding the function and evolution of genomes. In distantly related genomes, clusters of homologous gene pairs are evidence of candidate homologous regions. Demonstrating the statistical significance of such ‘‘gene clusters’’ is an essential component of comparative genomic analyses. However, currently ther...

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MOTIVATION The theory and practice of genome rearrangement analysis breaks down in the biologically widespread contexts where each gene may be present in a number of copies, not necessarily contiguous. In some of these contexts it is, however, appropriate to ask which members of each gene family in two genomes G and H, lengths lG and lH, are its true exemplars, i.e. which best reflect the origi...

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ژورنال

عنوان ژورنال: Molecular Biology and Evolution

سال: 2009

ISSN: 0737-4038,1537-1719

DOI: 10.1093/molbev/msp002